Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs6425740 chr1:31800753 T/C 8.25E-6 494 22.87 31.28 30.93 KM Plot
PRAD rs6425741 chr1:31802051 A/G 8.25E-6 494 22.87 31.28 30.93 KM Plot
PRAD rs6425742 chr1:31802227 A/G 8.25E-6 494 22.87 31.28 30.93 KM Plot
PRAD rs6441929 chr3:45924791 A/G 0.000164 491 32.98 27.47 11.22 KM Plot
PRAD rs6441931 chr3:45928730 A/G 4.37E-5 493 32.98 27.42 8.77 KM Plot
PRAD rs6478167 chr9:118220138 T/C 3.18E-6 494 20 31.27 31 KM Plot
PRAD rs6478168 chr9:118225951 A/T 0 488 15.03 31.27 31 KM Plot
PRAD rs6494678 chr15:67946247 C/T 4.43E-5 493 33.37 28.22 26.37 KM Plot
PRAD rs6516104 chr20:6089513 C/T 7.42E-7 494 31.12 29.17 26.37 KM Plot
PRAD rs6540163 chr16:88107160 C/A 9.68E-11 474 29.97 33.37 11.53 KM Plot
PRAD rs6541379 chr1:93896765 C/T 7.09E-8 494 31.3 28.72 28.77 KM Plot
PRAD rs6543546 chr2:240451234 G/A 1.08E-6 486 29.95 32.63 38.33 KM Plot
PRAD rs6552955 chr4:187062617 T/C 1.24E-6 493 28.07 29.25 31.2 KM Plot
PRAD rs6557385 chr6:155235217 A/G 0.000143 494 30.8 32.5 29.2 KM Plot
PRAD rs6558297 chr8:145143934 C/T 1.65E-5 483 31.18 29.67 19.1 KM Plot